- Aek Madoa, a stream
- Air Gamesan, a stream
- Ake Gamenli, a stream
- Ake Gamgola, a stream
- Ake Kaleng, a stream
- Ake Kowel, a stream
- Ake Koya, a stream
- Ake Melaroiasi, a stream
- Ake Nya, a stream
- Ake Tui, a stream
- Alo Mbaling, an intermittent stream in East Nusa Tenggara
- Bangkalang Balani, a stream in Central Sulawesi
- Bangkalang Bingkoli Dua, a stream in Central Sulawesi
- Bangkalang Bingkoli Satu, a stream in Central Sulawesi
- Bangkalang Bingkoli Tiga, a stream in Central Sulawesi
- Bangkalang Lenju, a stream in Central Sulawesi
- Bangkalang Ogoupil, a stream in Central Sulawesi
- Bangkalang Oyong, a stream in Central Sulawesi
- Bangkalang Sampaga, a stream in Central Sulawesi
- Bangkalang Silempu, a stream in Central Sulawesi
- Ci Beureum, a stream in Central Java
- Ci Guha, a stream in West Java
- Ci Karang, a canalized stream in West Java
- Ci Panundaan, a stream in West Java
- Danau Yagau, a lake
- Dutula Mongiilo, a stream in Propinsi Gorontalo
- Embung Lasentung, a lake in East Nusa Tenggara
- Hoven Channel, a marine channel in South Sulawesi
- Kali Bendo, an intermittent stream in Central Java
- Kali Condong, an intermittent stream in Central Java
- Kali Cuntelan, an intermittent stream in Central Java
- Kali Dengkeng, a stream in Central Java
- Kali Gandang, a stream in Central Java
- Kali Karangbandung, an intermittent stream in Central Java
- Kali Karangduwet, a stream in Central Java
- Kali Kemudu, an irrigation canal in Central Java
- Kali Ngemnan, a stream in Central Java
- Kali Peterangan, a stream in Central Java
- Kali Progo, a stream
- Kali Sedangdang, an intermittent stream in Central Java
- Kali Tipar, an intermittent stream in Central Java
- Kali Wela, an intermittent stream in Central Java
- Kuala Yafetu, a stream
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- Lowo Boanuba, an intermittent stream in East Nusa Tenggara
- Lowo Lianighi, an intermittent stream in East Nusa Tenggara
- Lowo Napameze, an intermittent stream in East Nusa Tenggara
- Lowo Nawa, an intermittent stream in East Nusa Tenggara
- Lowo Sasu, a stream in East Nusa Tenggara
- Lowo Wajo, a stream in East Nusa Tenggara
- Lowo Wakasa, an intermittent stream in East Nusa Tenggara
- Mota Autakak, an intermittent stream in East Nusa Tenggara
- Mota Nusikun, an intermittent stream in East Nusa Tenggara
- Mota Oe, an intermittent stream in East Nusa Tenggara
- Nanga Dero, a stream mouth in East Nusa Tenggara
- Nanga Maki, a stream mouth in East Nusa Tenggara
- Nanga Wagotaga, a stream mouth in East Nusa Tenggara
- Pelabuhan Marapokot, a port in East Nusa Tenggara
- Salo Cenregading, a stream in South Sulawesi
- Salo Lakepo, a stream in South Sulawesi
- Salo Lampoko, a stream in South Sulawesi
- Salo Lawari, a stream in South Sulawesi
- Salu Bonebone, a stream in South Sulawesi
- Salu Karondang, a stream in South Sulawesi
- Salu Lepalepa, a stream in South Sulawesi
- Salu Mongsia, a stream in South Sulawesi
- Salu Surruk, a stream in South Sulawesi
- Salu Tapa, a stream in South Sulawesi
- Salu Tendandua, a stream in South Sulawesi
- Selat Liran, a strait
- Selat Lirung, a strait
- Selat Siompu, a bay
- Selat Wasir, a strait
- Sungai Amal, a stream
- Sungai Nyaan, a stream
- Telaga Sendringo, a crater lake in Central Java
- Teluk Alyui, a bay
- Teluk Hudamabone, a bay
- Teluk Labunge, a bay in South Sulawesi
- Teluk Nanggu, a bay
- Teluk Pabean, a bay in West Java
- Teluk Sere, a bay
- Teluk Siota, a bay
- Teluk Talatakoh, a bay in Central Sulawesi
- Teluk Timala, a bay in Central Sulawesi
- Wae Uweh, a stream
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