- Alcoy in Province of Cebu, Central Visayas
- Amguhan in Province of Leyte, Eastern Visayas
- Balatikan in Province of North Cotabato, Soccsksargen
- Balong Balong in Province of Zamboanga del Sur, Zamboanga Peninsula
- Baracayo
- Barobaloto Rocks, a rock in Province of Samar, Eastern Visayas
- Bayog Hill, a hill in Province of Sulu, Autonomous Region in Muslim Mindanao
- Biri, population 2,597 in Biri, Northern Samar, Eastern Visayas
- Biri Anchorage, an anchorage in Northern Samar, Eastern Visayas
- Biri Channel, a marine channel in Northern Samar, Eastern Visayas
- Boro Banco in Province of Masbate, Bicol
- Borobantigue in Province of Masbate, Bicol
- Boso Dohonan Rocks, a rock in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Calian River, a stream in Province of Davao del Sur, Davao
- Calianan Shoal, a shoal in Eastern Samar, Eastern Visayas
- Canalasan Cove, a cove in Province of South Cotabato, Soccsksargen
- Capalan in Province of Iloilo, Western Visayas
- Capul, population 4,756 in Capul, Northern Samar, Eastern Visayas
- Capungan Peninsula, a peninsula in Province of Surigao del Sur, Caraga
- Caubang in Province of Surigao del Norte, Caraga
- Dalo Island, an island in Eastern Samar, Eastern Visayas
- Dansol in Province of Zamboanga del Sur, Zamboanga Peninsula
- Diar Diar Island, an island in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Dumalalig in Province of South Cotabato, Soccsksargen
- Gahit River, a stream in Province of Masbate, Bicol
- Galopalop in Province of Zamboanga del Sur, Zamboanga Peninsula
- Gamay River, a stream in Northern Samar, Eastern Visayas
- Gambam in Province of Davao del Sur, Davao
- Gambar in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Guinauayan in Province of Cebu, Central Visayas
- Guinghuran Bae in Province of Zamboanga del Sur, Zamboanga Peninsula
- Kabayama
- Kauit Point, a cape in Province of Zamboanga del Norte, Zamboanga Peninsula
- Kenebaka in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Kenebelen in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Lagoonit Bay, a bay in Province of Samar, Eastern Visayas
- Lubi in Province of Leyte, Eastern Visayas
- Mabini in Province of Sorsogon, Bicol
- Maguino-o
- Malauig Balas Point, a cape in Province of Iloilo, Western Visayas
- Malibon in Province of Masbate, Bicol
- Matungog Point, a cape in Province of Masbate, Bicol
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- Molung in Province of Samar, Eastern Visayas
- Mombon in Northern Samar, Eastern Visayas
- Mount Bagacay, a hill in Province of Masbate, Bicol
- Mount Bagalayog, a hill in Province of Masbate, Bicol
- Mount Banco, a hill in Province of Masbate, Bicol
- Nipa River, a stream in Province of Masbate, Bicol
- Nipein in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Padang in Eastern Samar, Eastern Visayas
- Paminuitan Hill, a hill in Province of Bohol, Central Visayas
- Pandaigan in Province of Masbate, Bicol
- Panlubiran in Province of Negros Oriental, Central Visayas
- Payasan in Province of Surigao del Sur, Caraga
- Payong Point, a cape in Province of Iloilo, Western Visayas
- Pidtimbasan
- Pitogo in Province of Zamboanga del Sur, Zamboanga Peninsula
- Pitogo Forest, a forest in Province of Zamboanga del Sur, Zamboanga Peninsula
- Saddle Peak, a hill in Province of Davao Oriental, Davao
- Salog River, a stream in Southern Leyte, Eastern Visayas
- Salug River, a stream in Eastern Samar, Eastern Visayas
- San Miguel
- Sangay Creek, a stream in Province of Negros Occidental, Western Visayas
- Sangay Point, a point in Province of Sulu, Autonomous Region in Muslim Mindanao
- Sangay River, a stream in Province of Sultan Kudarat, Soccsksargen
- Santa Cruz in Province of Davao Oriental, Davao
- Saonloc Bay, a bay in Northern Samar, Eastern Visayas
- Saosao in Compostela, Davao
- Sapa, population 2,572 in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Sihagon in Northern Samar, Eastern Visayas
- Sua Bay, a bay in Province of Samar, Eastern Visayas
- Sua Creek, a stream in Province of Negros Occidental, Western Visayas
- Suagon in Province of Sarangani, Soccsksargen
- Tabunac in Province of Negros Occidental, Western Visayas
- Tabunan Peninsula, a peninsula in Province of Surigao del Norte, Caraga
- Talik in Province of North Cotabato, Soccsksargen
- Talik Creek, a stream in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Talikud Strait, a strait in Province of Davao del Norte, Davao
- Tandumanuk in Province of Sulu, Autonomous Region in Muslim Mindanao
- Tigbauan River, a stream in Province of Leyte, Eastern Visayas
- Tinomiguez Creek, a stream
- Tuway Creek, an intermittent stream in Province of Negros Oriental, Central Visayas
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