- Agape in Province of Bohol, Central Visayas
- Agapita Hacienda in Province of Negros Oriental, Central Visayas
- Bagong in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Bai Sirafmang in Province of South Cotabato, Soccsksargen
- Big Caliban River, a stream in Province of Negros Occidental, Western Visayas
- Bogbog Creek, a stream in Province of South Cotabato, Soccsksargen
- Bolo Rock, a rock in Province of Samar, Eastern Visayas
- Bololacao in Province of Iloilo, Western Visayas
- Bolong, population 2,899 in Province of Iloilo, Western Visayas
- Bukali in Province of Samar, Eastern Visayas
- Busok River, a stream in Province of Sarangani, Soccsksargen
- Cabagonan River, a stream in Province of Bohol, Central Visayas
- Cabagsiuan Hacienda
- Cabahug
- Caburan Big River, a stream in Province of Davao del Sur, Davao
- Capo-ocan
- Cenelaren River, a stream in Northern Samar, Eastern Visayas
- Cenminong Channel, a marine channel in Province of Surigao del Norte, Caraga
- Daanlungsod in Province of Cebu, Central Visayas
- General MacArthur, population 4,491 in General MacArthur, Eastern Samar, Eastern Visayas
- General Malvar in Province of Negros Occidental, Western Visayas
- Inawayan, population 5,345 in Province of Davao del Sur, Davao
- Kalanasan in Province of Sarangani, Soccsksargen
- Kalang Point, a point in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Kalanguan in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Kalanguman Creek, a stream in Province of Bohol, Central Visayas
- Kalipangan Creek, a stream in Province of South Cotabato, Soccsksargen
- Kapimpilan in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Kapla River, a stream in Province of South Cotabato, Soccsksargen
- Ki Wacat in Province of Masbate, Bicol
- Kiupo, population 2,976 in Province of Sarangani, Soccsksargen
- Lake Cambirag, a lake in Province of Leyte, Eastern Visayas
- Lima Point, a point in Province of Davao Oriental, Davao
- Limao in Province of Samar, Eastern Visayas
- Limapatai Creek, a stream
- Limarayon
- Limasawa in Southern Leyte, Eastern Visayas
- Lucoban in Province of Zamboanga del Sur, Zamboanga Peninsula
- Lumakil in Province of South Cotabato, Soccsksargen
- Madaum in Province of Davao del Norte, Davao
- Madaum River, a stream in Province of Davao del Norte, Davao
- Malapag, population 3,306 in Province of North Cotabato, Soccsksargen
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- Mantalacan River, a stream in Province of South Cotabato, Soccsksargen
- Maronggues Hill, a hill in Province of Negros Occidental, Western Visayas
- Middle Reef, a reef in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Mount Balanayo, a mountain in Province of Sarangani, Soccsksargen
- Mount Capoto-on, a mountain in Province of Samar, Eastern Visayas
- Mount Kimpis, a hill in Province of Davao del Sur, Davao
- Mount Pagyasgas, a hill in Province of Davao del Sur, Davao
- Mount Yaua, a mountain in Province of Samar, Eastern Visayas
- Nopnapan in Compostela, Davao
- Nopol Hill, a peak
- Norala, population 45,466 in Davao
- Noranga Ranch in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Norte in Province of Zamboanga del Sur, Zamboanga Peninsula
- Pagueda in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Paguha in Southern Leyte, Eastern Visayas
- Patulangon in Province of Davao del Sur, Davao
- Pinnacle Rock, a rock in Province of Davao del Sur, Davao
- Point Kalang, a point in Province of Sulu, Autonomous Region in Muslim Mindanao
- Port Patuco, an anchorage in Province of Davao del Sur, Davao
- Red Cliff, a cliff in Province of South Cotabato, Soccsksargen
- Santigian in Province of Bohol, Central Visayas
- Santol Hill, a hill in Northern Samar, Eastern Visayas
- Sibuto in Province of Maguindanao, Autonomous Region in Muslim Mindanao
- Sibutu in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Sibutu Group, an island in Province of Sulu, Autonomous Region in Muslim Mindanao
- Sibutu Hill, a hill in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Sibutu Island, an island in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Sibutu Passage, a marine channel in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Sibutu Peak, a hill in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Sicaba dacu Peak, a peak in Province of Negros Occidental, Western Visayas
- Sicaba diotay Peak, a peak in Province of Negros Occidental, Western Visayas
- Suang Dapak, a stream in Province of Tawi-Tawi, Autonomous Region in Muslim Mindanao
- Sumbang Hill, a hill in Province of Sarangani, Soccsksargen
- Tagaytay in Province of Masbate, Bicol
- Tamingtaming in Province of Leyte, Eastern Visayas
- Tres Hermanos in Province of Negros Occidental, Western Visayas
- Triana in Southern Leyte, Eastern Visayas
- Triton Rocks, a rock in Province of Surigao del Sur, Caraga
- Tubalan Head, a headland in Province of Davao del Sur, Davao
- Union River, a stream in Province of Surigao del Norte, Caraga
- Uray Vanoa Rocks, a rock in Province of Samar, Eastern Visayas
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